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    PHF3 PHD finger protein 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716282, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PHF3provided by VGNC
    Official Full Name
    PHD finger protein 3provided by VGNC
    Primary source
    VGNC:VGNC:75975
    See related
    Ensembl:ENSMMUG00000017160
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PHF3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (109053427..109139229, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (61578268..61664082)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106997985 Neighboring gene protein eyes shut homolog Neighboring gene endogenous retrovirus group K member 25 Env polyprotein-like Neighboring gene translation initiation factor IF-2-like Neighboring gene protein tyrosine phosphatase 4A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      109053427..109139229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015136635.2 → XP_014992121.1  PHD finger protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZXK5, H9FS51
      Conserved Domains (4) summary
      TIGR01642
      Location:1844 → 1951
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cd15638
      Location:631 → 681
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:838 → 951
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:1114 → 1262
      SPOC; SPOC domain

    2. XM_015136636.2 → XP_014992122.1  PHD finger protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZXK5, H9FS51
      Conserved Domains (4) summary
      TIGR01642
      Location:1844 → 1951
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cd15638
      Location:631 → 681
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:838 → 951
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:1114 → 1262
      SPOC; SPOC domain

    3. XM_015136637.2 → XP_014992123.1  PHD finger protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZXK5, H9FS51
      Related
      ENSMMUP00000070392.1, ENSMMUT00000087430.1
      Conserved Domains (4) summary
      TIGR01642
      Location:1844 → 1951
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cd15638
      Location:631 → 681
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:838 → 951
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:1114 → 1262
      SPOC; SPOC domain

    4. XM_015136634.2 → XP_014992120.1  PHD finger protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AKR0, H9FS51
      Related
      ENSMMUP00000078504.1, ENSMMUT00000085816.1
      Conserved Domains (4) summary
      TIGR01622
      Location:1932 → 2040
      SF-CC1; splicing factor, CC1-like family
      cd15638
      Location:719 → 769
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:926 → 1039
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:1202 → 1350
      SPOC; SPOC domain
    Nucleotide Protein
    Heading Accession and Version

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