U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SORCS1 sortilin related VPS10 domain containing receptor 1 [ Gallus gallus (chicken) ]

    Gene ID: 423885, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    SORCS1provided by CGNC
    Full Name
    sortilin related VPS10 domain containing receptor 1provided by CGNC
    Primary source
    CGNC:6419
    See related
    Ensembl:ENSGALG00010020170
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SORCS1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (25914097..26469021, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (25805808..26081151, complement)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111061 Neighboring gene uncharacterized LOC121111062 Neighboring gene uncharacterized LOC121111203 Neighboring gene uncharacterized LOC121111205 Neighboring gene uncharacterized LOC124418089 Neighboring gene X-prolyl aminopeptidase (aminopeptidase P) 1, soluble Neighboring gene uncharacterized LOC124418090 Neighboring gene adducin 3 (gamma)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    VPS10 domain-containing receptor SorCS1; LOW QUALITY PROTEIN: VPS10 domain-containing receptor SorCS1
    Names
    VPS10 domain receptor protein SORCS 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      25914097..26469021 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025151802.3 → XP_025007570.1  VPS10 domain-containing receptor SorCS1 isoform X5

      Conserved Domains (3) summary
      TIGR00864
      Location:573 → 743
      PCC; polycystin cation channel protein
      smart00602
      Location:9 → 550
      VPS10; VPS10 domain
      pfam00801
      Location:564 → 637
      PKD; PKD domain

    2. XM_025151799.3 → XP_025007567.2  VPS10 domain-containing receptor SorCS1 isoform X4

      Conserved Domains (3) summary
      TIGR00864
      Location:840 → 1010
      PCC; polycystin cation channel protein
      smart00089
      Location:860 → 911
      PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
      smart00602
      Location:220 → 817
      VPS10; VPS10 domain

    3. XM_025151797.3 → XP_025007565.2  VPS10 domain-containing receptor SorCS1 isoform X2

      Conserved Domains (3) summary
      TIGR00864
      Location:840 → 1010
      PCC; polycystin cation channel protein
      smart00089
      Location:860 → 911
      PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
      smart00602
      Location:220 → 817
      VPS10; VPS10 domain

    4. XM_025151796.3 → XP_025007564.2  VPS10 domain-containing receptor SorCS1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZC64
      Related
      ENSGALP00010028799.1, ENSGALT00010048725.1
      Conserved Domains (3) summary
      TIGR00864
      Location:840 → 1010
      PCC; polycystin cation channel protein
      smart00089
      Location:860 → 911
      PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
      smart00602
      Location:220 → 817
      VPS10; VPS10 domain

    5. XM_040702989.1 → XP_040558923.1  VPS10 domain-containing receptor SorCS1 isoform X5

      Conserved Domains (3) summary
      TIGR00864
      Location:573 → 743
      PCC; polycystin cation channel protein
      smart00602
      Location:9 → 550
      VPS10; VPS10 domain
      pfam00801
      Location:564 → 637
      PKD; PKD domain

    6. XM_025151798.3 → XP_025007566.2  VPS10 domain-containing receptor SorCS1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZC64

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      25805808..26081151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040675012.2 → XP_040530946.1  LOW QUALITY PROTEIN: VPS10 domain-containing receptor SorCS1 isoform X6

      Conserved Domains (3) summary
      smart00089
      Location:860 → 911
      PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
      smart00602
      Location:220 → 817
      VPS10; VPS10 domain
      COG3291
      Location:860 → 1021
      COG3291; PKD repeat [Function unknown]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials