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    CG13116 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34288, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG13116provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032139
    Locus tag
    Dmel_CG13116
    See related
    AllianceGenome:FB:FBgn0032139
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13116
    Orthologs
    all
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    Genomic context

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    See CG13116 in Genome Data Viewer
    Location:
    30C6-30C6; 2-36 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9729940..9730945)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9729940..9730945)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pelota Neighboring gene uncharacterized protein Neighboring gene Nckx30C Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR46529

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Socially-responsive gene expression in male Drosophila melanogaster is influenced by the sex of the interacting partner. Ellis LL, et al. Genetics, 2011 Jan. PMID 20980240, Free PMC Article
    2. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
    3. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
    4. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273
    5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13116-PA
    CG13116-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      9729940..9730945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135462.3 → NP_609306.2  uncharacterized protein Dmel_CG13116, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609306.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8STJ9, Q9VL94
      Related
      FBpp0079459
      Conserved Domains (1) summary
      pfam03154
      Location:143 → 209
      Atrophin-1; Atrophin-1 family

    2. NM_001273368.1 → NP_001260297.1  uncharacterized protein Dmel_CG13116, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260297.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8STJ9, Q9VL94
      Conserved Domains (1) summary
      pfam03154
      Location:143 → 209
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8STJ9 Q8STJ9
    Q9VL94 Q9VL94

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