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    Ccnj cyclin J [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294053, updated on 27-Dec-2024

    Summary

    Symbol
    Ccnjprovided by RGD
    Full Name
    cyclin Jprovided by RGD
    Primary source
    RGD:1306399
    See related
    EnsemblRapid:ENSRNOG00000076838 AllianceGenome:RGD:1306399
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCNJ (cyclin J). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 65.3), Lung (RPKM 34.1) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Ccnj in Genome Data Viewer
    Location:
    1q54
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (249608991..249626798)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (239659588..239677367)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (259926537..259944275)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ectonucleoside triphosphate diphosphohydrolase 1 Neighboring gene uncharacterized LOC120097545 Neighboring gene coiled-coil and C2 domain containing 2B Neighboring gene uncharacterized LOC134484043 Neighboring gene U4 spliceosomal RNA Neighboring gene zinc finger protein 518A

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106369.1NP_001099839.1  cyclin-J

      See identical proteins and their annotated locations for NP_001099839.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473986
      UniProtKB/TrEMBL
      A6JH64
      Related
      ENSRNOP00000109541.1, ENSRNOT00000135481.1
      Conserved Domains (2) summary
      pfam02984
      Location:145274
      Cyclin_C; Cyclin, C-terminal domain
      cl00050
      Location:15109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      249608991..249626798
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006231376.5XP_006231438.1  cyclin-J isoform X1

      See identical proteins and their annotated locations for XP_006231438.1

      Conserved Domains (2) summary
      pfam02984
      Location:145263
      Cyclin_C; Cyclin, C-terminal domain
      cl00050
      Location:15109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    2. XM_006231377.5XP_006231439.1  cyclin-J isoform X2

      See identical proteins and their annotated locations for XP_006231439.1

      Conserved Domains (2) summary
      pfam02984
      Location:145262
      Cyclin_C; Cyclin, C-terminal domain
      cl00050
      Location:15109
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    3. XM_039109159.1XP_038965087.1  cyclin-J isoform X3

      Conserved Domains (1) summary
      cd20529
      Location:31131
      CYCLIN_CCNJ-like_rpt2; second cyclin box found in cyclin-J (CCNJ) family