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    C7h12orf56 similar to human chromosome 12 open reading frame 56 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500841, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C7h12orf56provided by RGD
    Official Full Name
    similar to human chromosome 12 open reading frame 56provided by RGD
    Primary source
    RGD:1561648
    See related
    EnsemblRapid:ENSRNOG00000023824 AllianceGenome:RGD:1561648
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561648
    Summary
    Orthologous to human C12orf56 (chromosome 12 open reading frame 56). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 44.7), Testes (RPKM 25.3) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See C7h12orf56 in Genome Data Viewer
    Location:
    7q22
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (59055283..59106900)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (57170406..57220930)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (63747676..63860603)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479881 Neighboring gene exportin for tRNA Neighboring gene growth hormone inducible transmembrane protein, pseudogene 2 Neighboring gene KICSTOR subunit 2 Neighboring gene uncharacterized LOC120093620 Neighboring gene SLIT-ROBO Rho GTPase activating protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C12orf56 homolog
    Names
    RGD1564122

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127567.1 → NP_001121039.1  uncharacterized protein C12orf56 homolog

      See identical proteins and their annotated locations for NP_001121039.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166520
      UniProtKB/TrEMBL
      B2GV44
      Conserved Domains (1) summary
      pfam15087
      Location:12 → 618
      DUF4551; Protein of unknown function (DUF4551)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      59055283..59106900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063264104.1 → XP_063120174.1  uncharacterized protein C12orf56 homolog isoform X2

    2. XM_039079747.2 → XP_038935675.1  uncharacterized protein C12orf56 homolog isoform X2

      Conserved Domains (1) summary
      pfam15087
      Location:12 → 445
      DUF4551; Protein of unknown function (DUF4551)

    3. XM_039079744.2 → XP_038935672.1  uncharacterized protein C12orf56 homolog isoform X1

      Related
      ENSRNOP00000060128.2, ENSRNOT00000067395.5
      Conserved Domains (1) summary
      pfam15087
      Location:12 → 502
      DUF4551; Protein of unknown function (DUF4551)

    4. XM_063264105.1 → XP_063120175.1  uncharacterized protein C12orf56 homolog isoform X3

    RNA

    1. XR_010053030.1 RNA Sequence

    2. XR_010053029.1 RNA Sequence

    3. XR_005486701.2 RNA Sequence

    4. XR_010053026.1 RNA Sequence

    5. XR_005486700.2 RNA Sequence

    6. XR_010053027.1 RNA Sequence

    7. XR_005486704.2 RNA Sequence

    8. XR_010053028.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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