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    Tsga10ip testis specific 10 interacting protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361707, updated on 9-Dec-2024

    Summary

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    Symbol
    Tsga10ipprovided by RGD
    Full Name
    testis specific 10 interacting proteinprovided by RGD
    Primary source
    RGD:1302964
    See related
    EnsemblRapid:ENSRNOG00000027564 AllianceGenome:RGD:1302964
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in cilium organization. Predicted to be located in cytoskeleton. Predicted to be active in photoreceptor connecting cilium. Predicted to colocalize with ciliary basal body. Orthologous to human TSGA10IP (testis specific 10 interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 225.6) and Kidney (RPKM 20.7) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tsga10ip in Genome Data Viewer
    Location:
    1q43
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (212129921..212144784, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (202700576..202714668, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (220772592..220786952, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 1A domain containing Neighboring gene spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP Neighboring gene uncharacterized LOC134483957 Neighboring gene Dr1 associated protein 1 Neighboring gene basophilic leukemia expressed protein BLES03

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cilium organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    colocalizes_with ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    colocalizes_with cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in photoreceptor connecting cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    testis-specific protein 10-interacting protein
    Names
    fibrous sheath protein
    tsga10-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004278.3 → NP_001004278.2  testis-specific protein 10-interacting protein isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      BC097254, JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AMG0

    2. NM_001270736.1 → NP_001257665.1  testis-specific protein 10-interacting protein isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate in-frame exon and uses alternate in-frame splice junctions at the 5' ends of two other exons compared to variant 1. The resulting isoform (2) contains an alternate segment and lacks two other alternate segments compared to isoform 1.
      Source sequence(s)
      BC097254, JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AMG0
      Related
      ENSRNOP00000033901.6, ENSRNOT00000038198.6

    3. NM_001270737.1 → NP_001257666.1  testis-specific protein 10-interacting protein isoform 3

      See identical proteins and their annotated locations for NP_001257666.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      BC097254, JAXUCZ010000001
      UniProtKB/Swiss-Prot
      Q4QRC4, Q66MI6
      UniProtKB/TrEMBL
      A0A8I6AMG0
      Related
      ENSRNOP00000095144.1, ENSRNOT00000103572.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      212129921..212144784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006230847.5 → XP_006230909.1  testis-specific protein 10-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A0H2UHU3, A0A8I6AMG0

    2. XM_063268232.1 → XP_063124302.1  testis-specific protein 10-interacting protein isoform X5

      UniProtKB/TrEMBL
      A0A8I6AMG0

    3. XM_008760156.4 → XP_008758378.1  testis-specific protein 10-interacting protein isoform X4

      UniProtKB/TrEMBL
      A0A8I6AMG0

    4. XM_039083901.2 → XP_038939829.1  testis-specific protein 10-interacting protein isoform X3

      UniProtKB/TrEMBL
      A0A8I6AMG0

    5. XM_008760155.4 → XP_008758377.1  testis-specific protein 10-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A8I6AMG0
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66MI6.2 GenPept UniProtKB/Swiss-Prot:Q66MI6

    Gene LinkOut

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