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    Cga glycoprotein hormones, alpha subunit [ Mus musculus (house mouse) ]

    Gene ID: 12640, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cgaprovided by MGI
    Official Full Name
    glycoprotein hormones, alpha subunitprovided by MGI
    Primary source
    MGI:MGI:88390
    See related
    Ensembl:ENSMUSG00000028298 AllianceGenome:MGI:88390
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HCG; LHA; FSHA; Tsha; aGSU; GPHA1; alphaSU; CG-alpha; GPHalpha; alphaGSU; alpha-GSU
    Summary
    Predicted to enable follicle-stimulating hormone activity. Acts upstream of or within several processes, including gonadotropin secretion; thyroid gland development; and thyroid hormone generation. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Is expressed in brain; future pituitary; and retina nuclear layer. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
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    Genomic context

    See Cga in Genome Data Viewer
    Location:
    4 A5; 4 16.86 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (34893779..34907374)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (34893779..34907374)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 57497 Neighboring gene zinc finger protein 292 Neighboring gene STARR-positive B cell enhancer mm9_chr4:34767165-34767465 Neighboring gene tubulin, beta 6 pseudogene Neighboring gene STARR-seq mESC enhancer starr_09922 Neighboring gene STARR-seq mESC enhancer starr_09925 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:34833884-34833993 Neighboring gene STARR-seq mESC enhancer starr_09928 Neighboring gene STARR-seq mESC enhancer starr_09932 Neighboring gene pluripotency associated transcript 9 Neighboring gene ubiquitin protein ligase E3 component n-recognin 7 (putative) pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC107283

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables follicle-stimulating hormone activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables follicle-stimulating hormone activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables follicle-stimulating hormone activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables hormone activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in G protein-coupled receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within cellular response to hormone stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within developmental growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within follicle-stimulating hormone secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within gonad development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within luteinizing hormone secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of organ growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of organ growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of steroid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of steroid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of steroid biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of signaling receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within thyroid gland development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in thyroid hormone generation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within thyroid hormone generation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of follicle-stimulating hormone complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of follicle-stimulating hormone complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of follicle-stimulating hormone complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of pituitary gonadotropin complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    glycoprotein hormones alpha chain
    Names
    FSH-alpha
    LSH-alpha
    TSH-alpha
    anterior pituitary glycoprotein hormones common subunit alpha
    follicle-stimulating hormone alpha chain
    follitropin alpha chain
    luteinizing hormone alpha chain
    lutropin alpha chain
    thyroid-stimulating hormone alpha chain
    thyrotropin alpha chain

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009889.2NP_034019.1  glycoprotein hormones alpha chain precursor

      See identical proteins and their annotated locations for NP_034019.1

      Status: PROVISIONAL

      Source sequence(s)
      AL929565
      Consensus CDS
      CCDS18035.1
      UniProtKB/Swiss-Prot
      P01216, P11963, Q5M8P4
      UniProtKB/TrEMBL
      A0A0F7RQH1, A2AVN2
      Related
      ENSMUSP00000029975.4, ENSMUST00000029975.10
      Conserved Domains (1) summary
      pfam00236
      Location:26113
      Hormone_6; Glycoprotein hormone

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      34893779..34907374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006537586.2XP_006537649.1  glycoprotein hormones alpha chain isoform X1

      See identical proteins and their annotated locations for XP_006537649.1

      UniProtKB/Swiss-Prot
      P01216, P11963, Q5M8P4
      UniProtKB/TrEMBL
      A0A0F7RQH1, A2AVN2
      Conserved Domains (1) summary
      pfam00236
      Location:26113
      Hormone_6; Glycoprotein hormone