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    zp3d.1 zona pellucida glycoprotein 3d tandem duplicate 1 [ Danio rerio (zebrafish) ]

    Gene ID: 327616, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zp3d.1provided by ZNC
    Official Full Name
    zona pellucida glycoprotein 3d tandem duplicate 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5827
    See related
    Ensembl:ENSDARG00000040081 AllianceGenome:ZFIN:ZDB-GENE-030131-5827
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi20d05; zpc4a-1; zgc:66432; wu:fi20d05
    Summary
    Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See zp3d.1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (42057998..42066617, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (42107966..42116585, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene Fli-1 proto-oncogene, ETS transcription factor-related sequence Neighboring gene zona pellucida glycoprotein 3d tandem duplicate 2 Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B Neighboring gene uncharacterized LOC110437998 Neighboring gene uncharacterized LOC137487962

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Bioinformatic analyses of zona pellucida genes in vertebrates and their expression in Nile tilapia. Wu T, et al. Fish Physiol Biochem, 2018 Apr. PMID 29307115
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acrosin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in binding of sperm to zona pellucida IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in egg coat formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of acrosome reaction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zona pellucida glycoprotein 3d tandem duplicate 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199838.1 → NP_956132.1  zona pellucida glycoprotein 3d tandem duplicate 1 precursor

      See identical proteins and their annotated locations for NP_956132.1

      Status: PROVISIONAL

      Source sequence(s)
      BC055654
      UniProtKB/TrEMBL
      Q7SXD2
      Related
      ENSDARP00000058619.1, ENSDART00000058620.2
      Conserved Domains (2) summary
      smart00241
      Location:127 → 357
      ZP; Zona pellucida (ZP) domain
      pfam00100
      Location:262 → 369
      Zona_pellucida; Zona pellucida-like domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      42057998..42066617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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