si:ch1073-143l10.2 si:ch1073-143l10.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch1073-143l10.2provided by ZNC
Official Full Name: si:ch1073-143l10.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-863
See related: Ensembl:ENSDARG00000094899 AllianceGenome:ZFIN:ZDB-GENE-030131-863
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb51c12; wu:fb51c12
Summary: Predicted to enable protein-membrane adaptor activity. Predicted to be involved in autophagosome assembly. Predicted to be part of Atg12-Atg5-Atg16 complex. Predicted to be active in autophagosome membrane and phagophore assembly site membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:ch1073-143l10.2 in Genome Data Viewer

Location:: chromosome: 10

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (22907344..22912265, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (22938055..22942794, complement)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb51c12.x1 (e-PCR)
- UniSTS:203266

fc14e09.x1 (e-PCR)
- UniSTS:203812

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within autophagosome assembly	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC565165

Names: autophagy-related protein 16-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386725.1 → NP_001373654.1 uncharacterized protein LOC565165

Status: VALIDATED

Source sequence(s)

CU469521

UniProtKB/TrEMBL

A0A8M3B374, E9QB44

Related

ENSDARP00000116613.1, ENSDART00000131992.2

Conserved Domains (1) summary

TIGR02168
Location:79 → 189

SMC_prok_B; chromosome segregation protein SMC, common bacterial type