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    zgc:136858 zgc:136858 [ Danio rerio (zebrafish) ]

    Gene ID: 678543, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:136858provided by ZNC
    Official Full Name
    zgc:136858provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060421-6632
    See related
    Ensembl:ENSDARG00000070830 AllianceGenome:ZFIN:ZDB-GENE-060421-6632
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb68f01; wu:fb68f01
    Summary
    Predicted to enable pseudouridylate synthase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:136858 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (20027086..20049502, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (19929432..19951845, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 178Ba Neighboring gene CCR4-NOT transcription complex, subunit 4a Neighboring gene interleukin-17 receptor A Neighboring gene troponin I4b, tandem duplicate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC136858

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pseudouridylate synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables pseudouridylate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleoside phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC678543

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040302.1 → NP_001035392.1  uncharacterized protein LOC678543

      See identical proteins and their annotated locations for NP_001035392.1

      Status: PREDICTED

      Source sequence(s)
      BC115294
      UniProtKB/TrEMBL
      Q1RLT6
      Related
      ENSDARP00000095090.3, ENSDART00000104315.5
      Conserved Domains (2) summary
      cd01941
      Location:351 → 668
      YeiC_kinase_like; YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
      pfam04227
      Location:33 → 322
      Indigoidine_A; Indigoidine synthase A like protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      20027086..20049502 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009298013.3 → XP_009296288.1  uncharacterized protein LOC678543 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AP46
      Conserved Domains (2) summary
      cd01941
      Location:351 → 667
      YeiC_kinase_like; YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
      pfam04227
      Location:33 → 322
      Indigoidine_A; Indigoidine synthase A like protein
    Nucleotide Protein Strain
    Heading Accession and Version

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