cd164 CD164 molecule, sialomucin [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cd164provided by ZNC
Official Full Name: CD164 molecule, sialomucinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1598
See related: Ensembl:ENSDARG00000013628 AllianceGenome:ZFIN:ZDB-GENE-030131-1598
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb75f06; fj87f10; wu:fb75f06; wu:fj87f10; si:ch211-51a19.2
Summary: Acts upstream of or within renal system process. Predicted to be located in membrane. Predicted to be active in cytoplasmic vesicle. Is expressed in several structures, including digestive system; epidermis; notochord; pronephros; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 66. Orthologous to human CD164 (CD164 molecule). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 20

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (32118586..32137060)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (32215707..32234181)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Endolyn is identified as an important gene for zebrafish pronephric kidney function.[Endolyn]
Title: Apical targeting and endocytosis of the sialomucin endolyn are essential for establishment of zebrafish pronephric kidney function.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fb75f06.x1 (e-PCR)
- UniSTS:191257

fb75f06 (e-PCR)
- UniSTS:187496

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within renal system process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in cytoplasmic vesicle	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: sialomucin core protein 24

Names: endolyn

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.