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    prrg3 proline rich and Gla domain 3 [ Danio rerio (zebrafish) ]

    Gene ID: 100000713, updated on 3-Dec-2024

    Summary

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    Gene symbol
    prrg3
    Gene description
    proline rich and Gla domain 3
    See related
    Ensembl:ENSDARG00000079102 Ensembl:ENSDARG00000108937
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    human mouse all
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    Genomic context

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    See prrg3 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (37915969..37962337, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (37868263..37886778, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438245 Neighboring gene G protein-coupled receptor 34 like Neighboring gene gamma-aminobutyric acid type A receptor subunit beta4 Neighboring gene ripply transcriptional repressor 1 Neighboring gene RNA binding motif protein 41 Neighboring gene claudin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transmembrane gamma-carboxyglutamic acid protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386279.1 → NP_001373208.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CABZ01032646, FO704750
      UniProtKB/TrEMBL
      A0A8M1PUI3
      Related
      ENSDARP00000148061.1, ENSDART00000184138.1
      Conserved Domains (1) summary
      pfam05644
      Location:17 → 287
      Miff; Mitochondrial and peroxisomal fission factor Mff

    2. NM_001386280.1 → NP_001373209.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CABZ01032646, FO704750
      Related
      ENSDARP00000143574.1, ENSDART00000177664.2
      Conserved Domains (1) summary
      pfam05644
      Location:17 → 227
      Miff; Mitochondrial and peroxisomal fission factor Mff

    3. NM_001386281.1 → NP_001373210.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      CABZ01032646, FO704750
      Conserved Domains (1) summary
      pfam05644
      Location:17 → 205
      Miff; Mitochondrial and peroxisomal fission factor Mff

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      37915969..37962337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215745.1 → XP_068071846.1  transmembrane gamma-carboxyglutamic acid protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8M1PUI3

    2. XM_686654.8 → XP_691746.5  transmembrane gamma-carboxyglutamic acid protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8N7UVA3
      Related
      ENSDARP00000153850.1, ENSDART00000180331.1

    RNA

    1. XR_011007947.1 RNA Sequence

    2. XR_011007948.1 RNA Sequence

    3. XR_011007946.1 RNA Sequence

    4. XR_011007945.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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