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    ccdc149b coiled-coil domain containing 149b [ Danio rerio (zebrafish) ]

    Gene ID: 436983, updated on 4-Jan-2025

    Summary

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    Official Symbol
    ccdc149bprovided by ZNC
    Official Full Name
    coiled-coil domain containing 149bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-465
    See related
    Ensembl:ENSDARG00000020857 AllianceGenome:ZFIN:ZDB-GENE-040718-465
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc149; fi16d12; ccdc149a; zgc:92601; wu:fi16d12
    Summary
    Orthologous to human CCDC149 (coiled-coil domain containing 149). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See ccdc149b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (40034042..40053248)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (39315958..39335177)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 2 associated protein 2 Neighboring gene leucine-rich repeat LGI family, member 2b Neighboring gene si:dkey-117m1.4 Neighboring gene ciliary neurotrophic factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Rmrp Mutation Disrupts Chondrogenesis and Bone Ossification in Zebrafish Model of Cartilage-Hair Hypoplasia via Enhanced Wnt/β-Catenin Signaling. Sun X, et al. J Bone Miner Res, 2019 Nov. PMID 31237961
    2. Comparative evolutionary genomics of medaka and three-spined stickleback fabp2a and fabp2b genes with fabp2 of zebrafish. Parmar MB, et al. Genome, 2013 Jan. PMID 23379336
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 149-B
    Names
    coiled-coil domain containing 149
    coiled-coil domain-containing protein 149-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002710.2 → NP_001002710.2  coiled-coil domain-containing protein 149-B isoform 1

      Status: VALIDATED

      Source sequence(s)
      CT737206
      UniProtKB/Swiss-Prot
      Q6DH86
      UniProtKB/TrEMBL
      A0A8M3ATZ7
      Related
      ENSDARP00000014360.6, ENSDART00000011727.7

    2. NM_001431081.1 → NP_001418010.1  coiled-coil domain-containing protein 149-B isoform 2

      Status: VALIDATED

      Source sequence(s)
      CT737206
      UniProtKB/Swiss-Prot
      Q6DH86
      UniProtKB/TrEMBL
      A0A8M2B6N6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      40034042..40053248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005160000.5 → XP_005160057.1  coiled-coil domain-containing protein 149-B isoform X1

      UniProtKB/Swiss-Prot
      Q6DH86
      UniProtKB/TrEMBL
      A0A8M2B6T2
      Conserved Domains (2) summary
      pfam09789
      Location:22 → 335
      DUF2353; Uncharacterized coiled-coil protein (DUF2353)
      cl03075
      Location:147 → 194
      GrpE; nucleotide exchange factor GrpE

    2. XM_021471807.2 → XP_021327482.1  coiled-coil domain-containing protein 149-B isoform X2

      UniProtKB/Swiss-Prot
      Q6DH86
      UniProtKB/TrEMBL
      A0A8M9P9A7
      Conserved Domains (1) summary
      pfam09789
      Location:22 → 335
      DUF2353; Uncharacterized coiled-coil protein (DUF2353)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394500.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      20475..39673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DH86.1 GenPept UniProtKB/Swiss-Prot:Q6DH86

    Gene LinkOut

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