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    pcmtd1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 327176, updated on 9-Dec-2024

    Summary

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    Official Symbol
    pcmtd1provided by ZNC
    Official Full Name
    protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5387
    See related
    Ensembl:ENSDARG00000053152 AllianceGenome:ZFIN:ZDB-GENE-030131-5387
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd15e12; wu:fd15e12; wu:fi15f10; zgc:123165
    Summary
    Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within protein modification process. Predicted to be located in membrane. Predicted to be active in cytoplasm. Is expressed in central nervous system. Orthologous to human PCMTD1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See pcmtd1 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (35183489..35218080)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (35297336..35331815)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene RB1-inducible coiled-coil 1 Neighboring gene ST18 C2H2C-type zinc finger transcription factor Neighboring gene syntrophin, gamma 1 Neighboring gene uncharacterized LOC108181546 Neighboring gene snail family zinc finger 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene-expression analysis of hair cell regeneration in the zebrafish lateral line. Jiang L, et al. Proc Natl Acad Sci U S A, 2014 Apr 8. PMID 24706903, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC111953, MGC123165

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein-L-isoaspartate O-methyltransferase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030067.3 → NP_001025238.3  protein-L-isoaspartate O-methyltransferase domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      CABZ01027809, CABZ01079096, CABZ01079098
      UniProtKB/TrEMBL
      Q32PW8
      Related
      ENSDARP00000069627.4, ENSDART00000075142.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      35183489..35218080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068217031.1 → XP_068073132.1  protein-L-isoaspartate O-methyltransferase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      Q32PW8
      Related
      ENSDARP00000140825.2, ENSDART00000158801.2
    Nucleotide Protein Strain
    Heading Accession and Version

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