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    btf3l4 basic transcription factor 3-like 4 [ Danio rerio (zebrafish) ]

    Gene ID: 393667, updated on 9-Dec-2024

    Summary

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    Official Symbol
    btf3l4provided by ZNC
    Official Full Name
    basic transcription factor 3-like 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1650
    See related
    Ensembl:ENSDARG00000089681 AllianceGenome:ZFIN:ZDB-GENE-040426-1650
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:73053
    Summary
    Orthologous to human BTF3L4 (basic transcription factor 3 like 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See btf3l4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (13041398..13055801)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (12983684..12998142)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene cholinergic receptor, nicotinic, alpha 4b Neighboring gene prostaglandin F receptor (FP) Neighboring gene zinc finger, FYVE domain containing 9b Neighboring gene ELOVL fatty acid elongase 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Farnsworth DR, et al. Exp Eye Res, 2021 May. PMID 33705730, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC73053

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor BTF3 homolog 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200694.1 → NP_956988.1  transcription factor BTF3 homolog 4

      See identical proteins and their annotated locations for NP_956988.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059432
      UniProtKB/Swiss-Prot
      Q6PC91
      Related
      ENSDARP00000137039.1, ENSDART00000162074.2
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      13041398..13055801
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068224128.1 → XP_068080229.1  transcription factor BTF3 homolog 4 isoform X1

    2. XM_021479564.2 → XP_021335239.1  transcription factor BTF3 homolog 4 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QCZ1
      Related
      ENSDARP00000137655.1, ENSDART00000170889.3
      Conserved Domains (1) summary
      pfam01849
      Location:56 → 103
      NAC; NAC domain

    3. XM_009305886.3 → XP_009304161.1  transcription factor BTF3 homolog 4 isoform X3

      See identical proteins and their annotated locations for XP_009304161.1

      UniProtKB/Swiss-Prot
      Q6PC91
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain

    4. XM_068224129.1 → XP_068080230.1  transcription factor BTF3 homolog 4 isoform X3

      UniProtKB/Swiss-Prot
      Q6PC91

    5. XM_009305887.4 → XP_009304162.1  transcription factor BTF3 homolog 4 isoform X3

      See identical proteins and their annotated locations for XP_009304162.1

      UniProtKB/Swiss-Prot
      Q6PC91
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PC91.1 GenPept UniProtKB/Swiss-Prot:Q6PC91

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