yju2b YJU2 splicing factor homolog B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: yju2bprovided by ZNC
Official Full Name: YJU2 splicing factor homolog Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040912-36
See related: Ensembl:ENSDARG00000041533 AllianceGenome:ZFIN:ZDB-GENE-040912-36
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ccdc130; zgc:103496
Summary: Predicted to be involved in RNA splicing. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human YJU2B (YJU2 splicing factor homolog B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (26239424..26251563, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (26219527..26231666, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in RNA splicing	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U2-type spliceosomal complex	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of post-mRNA release spliceosomal complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: probable splicing factor YJU2B

Names: coiled-coil domain containing 130; coiled-coil domain-containing protein 130 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205595.2 → NP_991158.2 probable splicing factor YJU2B

Status: VALIDATED

Source sequence(s)

BX890627, EH546621, EH567761

UniProtKB/Swiss-Prot

Q66I85, Q6TNS9

Related

ENSDARP00000060887.6, ENSDART00000060888.8

Conserved Domains (2) summary

COG5134
Location:7 → 231

COG5134; Uncharacterized conserved protein [Function unknown]

pfam04502
Location:8 → 238

DUF572; Family of unknown function (DUF572)