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    BPS2 BPS1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819216, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPS2
    Official Full Name
    BPS1-like protein
    Primary source
    TAIR:AT2G46080
    Locus tag
    AT2G46080
    See related
    Araport:AT2G46080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BYPASS 2; T3F17.27
    Summary
    Encodes a protein related to BYPASS1 (BPS1). Regulates production of mobile compound: bps signal.
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    Genomic context

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    See BPS2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (18948116..18950120, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein-like protein Neighboring gene mitogen-activated protein kinase 12 Neighboring gene Diacylglycerol kinase family protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein Neighboring gene ketopantoate hydroxymethyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cryptic natural variant allele of BYPASS2 suppresses the bypass1 mutant phenotype. Cummins AJ, et al. Plant Physiol, 2023 May 31. PMID 36905371, Free PMC Article
    2. In the absence of BYPASS1-related gene function, the bps signal disrupts embryogenesis by an auxin-independent mechanism. Lee DK, et al. Development, 2012 Feb. PMID 22274700, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A cryptic natural variant allele of BYPASS2 suppresses the bypass1 mutant phenotype.
      Title: A cryptic natural variant allele of BYPASS2 suppresses the bypass1 mutant phenotype.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_130171.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in root development IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in shoot system development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BPS1-like protein
    NP_566063.1
    • CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18948116..18950120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130171.4 → NP_566063.1  BPS1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566063.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNI3, O82360, Q93Z73
    Nucleotide Protein
    Heading Accession and Version

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