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    Serine protease inhibitor, potato inhibitor I-type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818474, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Serine protease inhibitor, potato inhibitor I-type family protein
    Primary source
    TAIR:AT2G38900
    Locus tag
    AT2G38900
    See related
    Araport:AT2G38900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7F6.7; T7F6_7
    Summary
    Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16243215..16244175)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Low temperature and salt responsive protein family Neighboring gene calcium-dependent protein kinase 20 Neighboring gene SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant pathogenesis-related (PR) proteins: a focus on PR peptides. Sels J, et al. Plant Physiol Biochem, 2008 Nov. PMID 18674922
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_129447.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Serine protease inhibitor, potato inhibitor I-type family protein
    NP_001189707.1
    • Serine protease inhibitor, potato inhibitor I-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor, potato inhibitor I-type family protein (TAIR:AT2G38870.1).
    NP_030438.1
    • Serine protease inhibitor, potato inhibitor I-type family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity; INVOLVED IN: response to wounding, defense response; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I13, potato inhibitor I (InterPro:IPR000864); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor, potato inhibitor I-type family protein (TAIR:AT2G38870.1); Has 277 Blast hits to 277 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 269; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16243215..16244175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202778.2 → NP_001189707.1  Serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189707.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZC3, F4IU00
      Conserved Domains (1) summary
      pfam00280
      Location:26 → 88
      potato_inhibit; Potato inhibitor I family

    2. NM_129447.5 → NP_030438.1  Serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_030438.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F1F3, Q9ZV16
      Conserved Domains (1) summary
      pfam00280
      Location:11 → 73
      potato_inhibit; Potato inhibitor I family
    Nucleotide Protein
    Heading Accession and Version

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