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    LOW protein: F-box/kelch-repeat protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816959, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LOW protein: F-box/kelch-repeat protein (DUF295)
    Primary source
    TAIR:AT2G24250
    Locus tag
    AT2G24250
    See related
    Araport:AT2G24250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27D4.23
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (10313066..10314985, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BTB/POZ domain with WD40/YVTN repeat-like protein Neighboring gene LOW protein: F-box/kelch-repeat protein Neighboring gene LJRHL1-like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036330.2
    NM_127986.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    LOW protein: F-box/kelch-repeat protein (DUF295)
    NP_001031407.1
    • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G64840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565565.1
    • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G64840.1); Has 154 Blast hits to 151 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10313066..10314985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036330.2 → NP_001031407.1  LOW protein: F-box/kelch-repeat protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031407.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94C28, Q9ZUH0
      UniProtKB/TrEMBL
      A0A5S9X0Y8, A0A654EWT7, B9DHG3
      Conserved Domains (2) summary
      PLN03215
      Location:13 → 53
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
      pfam03478
      Location:282 → 327
      DUF295; Protein of unknown function (DUF295)

    2. NM_127986.2 → NP_565565.1  LOW protein: F-box/kelch-repeat protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565565.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94C28, Q9ZUH0
      UniProtKB/TrEMBL
      A0A5S9X0Y8, A0A654EWT7, B9DHG3
      Conserved Domains (2) summary
      PLN03215
      Location:13 → 53
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
      pfam03478
      Location:282 → 327
      DUF295; Protein of unknown function (DUF295)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUH0.2

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