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    CID11 CTC-interacting domain 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840173, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID11
    Official Full Name
    CTC-interacting domain 11
    Primary source
    TAIR:AT1G32790
    Locus tag
    AT1G32790
    See related
    Araport:AT1G32790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 11; F6N18.17; F6N18_17
    Summary
    RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.
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    Genomic context

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    See CID11 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (11874508..11877549, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GroES-like zinc-binding dehydrogenase family protein Neighboring gene ncRNA Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036054.2
    NM_103013.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 11
    NP_001031131.1
    • CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_174556.1
    • CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.1); Has 4154 Blast hits to 3448 proteins in 292 species: Archae - 0; Bacteria - 29; Metazoa - 2530; Fungi - 406; Plants - 814; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11874508..11877549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036054.2 → NP_001031131.1  CTC-interacting domain 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031131.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WIN9, F4IEC7
      Conserved Domains (3) summary
      cd12459
      Location:171 → 250
      RRM1_CID8_like; RNA recognition motif 1 in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:266 → 347
      RRM2_CID8_like; RNA recognition motif 2 in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      pfam07145
      Location:88 → 105
      PAM2; Ataxin-2 C-terminal region

    2. NM_103013.3 → NP_174556.1  CTC-interacting domain 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174556.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94JR0, Q9LPI5
      UniProtKB/TrEMBL
      A0A178WNK8, A0A5S9WIN9
      Conserved Domains (3) summary
      pfam07145
      Location:90 → 105
      PAM2; Ataxin-2 C-terminal region
      cd12459
      Location:171 → 250
      RRM1_CID8_like; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:266 → 347
      RRM2_CID8_like; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LPI5.1

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