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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820057, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT3G09040
    Locus tag
    AT3G09040
    See related
    Araport:AT3G09040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MEF12; mitochondrial RNA editing factor 12
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (2760397..2764607, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene josephin-like protein Neighboring gene Concanavalin A-like lectin family protein Neighboring gene 8-amino-7-oxononanoate synthase Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain. Härtel B, et al. RNA Biol, 2013. PMID 23845994, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The longest mitochondrial RNA editing AT3G09040 protein requires the full-length E domain.
      Title: The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001337795.1
    NM_001337797.1
    NM_111738.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_001319506.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2760397..2764607 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337796.1 → NP_001326908.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQP8, A0A654F5F7
      Conserved Domains (4) summary
      PLN03077
      Location:371 → 1035
      PLN03077; Protein ECB2; Provisional
      PLN03081
      Location:51 → 416
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00006
      Location:926 → 956
      TPR; TPR repeat [structural motif]
      sd00004
      Location:253 → 280
      PPR; PPR repeat [structural motif]

    2. NM_001337795.1 → NP_001319506.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SS83
      UniProtKB/TrEMBL
      A0A178V8N2, A0A654F5F7

    3. NM_001337797.1 → NP_001326907.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQP8, A0A654F5F7
      Conserved Domains (4) summary
      PLN03077
      Location:371 → 1035
      PLN03077; Protein ECB2; Provisional
      PLN03081
      Location:51 → 416
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00006
      Location:926 → 956
      TPR; TPR repeat [structural motif]
      sd00004
      Location:253 → 280
      PPR; PPR repeat [structural motif]

    4. NM_111738.1 → NP_187516.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187516.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SS83
      UniProtKB/TrEMBL
      A0A178V8N2, A0A654F5F7
      Conserved Domains (7) summary
      TIGR00756
      Location:227 → 260
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00006
      Location:901 → 931
      TPR; TPR repeat [structural motif]
      sd00004
      Location:228 → 255
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:800 → 830
      PPR; PPR repeat
      pfam13041
      Location:798 → 846
      PPR_2; PPR repeat family
      pfam13431
      Location:926 → 955
      TPR_17; Tetratricopeptide repeat
      pfam14432
      Location:971 → 1016
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SS83.1

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