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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821107, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT3G01580
    Locus tag
    AT3G01580
    See related
    Araport:AT3G01580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4P13.34; F4P13_34
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (223332..225682, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene proline-rich receptor-like kinase, putative (DUF1421) Neighboring gene Oleosin family protein Neighboring gene uncharacterized protein Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene NAC domain containing protein 44

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_186807.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 41472 Blast hits to 13221 proteins in 229 species: Archae - 0; Bacteria - 3; Metazoa - 37; Fungi - 79; Plants - 40856; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      223332..225682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111024.3 → NP_186807.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186807.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SS97
      UniProtKB/TrEMBL
      A0A178V870, A0A5S9X875, A0A654F365
      Conserved Domains (4) summary
      sd00004
      Location:434 → 462
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:433 → 461
      PPR; PPR repeat
      pfam13041
      Location:430 → 480
      PPR_2; PPR repeat family
      cl03252
      Location:124 → 154
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SS97.2

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