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    HDG8 homeodomain GLABROUS 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821305, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HDG8
    Official Full Name
    homeodomain GLABROUS 8
    Primary source
    TAIR:AT3G03260
    Locus tag
    AT3G03260
    See related
    Araport:AT3G03260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    homeodomain GLABROUS 8; T17B22.5; T17B22_5
    Summary
    Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
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    Genomic context

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    See HDG8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (755159..759282, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene UDP-GLUCOSE PYROPHOSPHORYLASE 1 Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene prolamin-like protein (DUF1278)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AIL and HDG proteins act antagonistically to control cell proliferation. Horstman A, et al. Development, 2015 Feb 1. PMID 25564655
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001337463.1
    NM_111196.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    homeodomain GLABROUS 8
    NP_186976.2
    • homeodomain GLABROUS 8 (HDG8); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: embryo, fruit, endosperm; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 9 (TAIR:AT5G17320.1); Has 5172 Blast hits to 5157 proteins in 374 species: Archae - 0; Bacteria - 0; Metazoa - 3073; Fungi - 142; Plants - 1885; Viruses - 1; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      755159..759282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111196.2 → NP_186976.2  homeodomain GLABROUS 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186976.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GY47, Q9M9P4
      UniProtKB/TrEMBL
      A0A654F3N0
      Conserved Domains (3) summary
      cd08875
      Location:208 → 434
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      pfam00046
      Location:24 → 79
      Homeobox; Homeobox domain
      cl14643
      Location:486 → 664
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    2. NM_001337463.1 → NP_001326716.1  homeodomain GLABROUS 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQ48
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9P4.2

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