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    HSFA1E heat shock transcription factor A1E [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821162, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HSFA1E
    Official Full Name
    heat shock transcription factor A1E
    Primary source
    TAIR:AT3G02990
    Locus tag
    AT3G02990
    See related
    Araport:AT3G02990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHSFA1E; F13E7.6; F13E7_6; heat shock transcription factor A1E
    Summary
    member of Heat Stress Transcription Factor (Hsf) family
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    Genomic context

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    See HSFA1E in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (673428..676428)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene EXORDIUM like 6 Neighboring gene MEIOTIC CONTROL OF CROSSOVERS1 Neighboring gene ncRNA Neighboring gene EF hand calcium-binding protein family Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression. Yoshida T, et al. Mol Genet Genomics, 2011 Dec. PMID 21931939
    2. HsfA1d and HsfA1e involved in the transcriptional regulation of HsfA2 function as key regulators for the Hsf signaling network in response to environmental stress. Nishizawa-Yokoi A, et al. Plant Cell Physiol, 2011 May. PMID 21471117
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These findings indicated that HsfA1d and HsfA1e not only regulate HsfA2 expression but also function as key regulators of the Hsf signaling network in response to environmental stress.
      Title: HsfA1d and HsfA1e involved in the transcriptional regulation of HsfA2 function as key regulators for the Hsf signaling network in response to environmental stress.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111169.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    heat shock transcription factor A1E
    NP_186949.1
    • heat shock transcription factor A1E (HSFA1E); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 3 (TAIR:AT5G16820.2); Has 2512 Blast hits to 2481 proteins in 244 species: Archae - 0; Bacteria - 10; Metazoa - 450; Fungi - 485; Plants - 859; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      673428..676428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111169.5 → NP_186949.1  heat shock transcription factor A1E [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186949.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0V855, Q9M8U0, Q9SCW5
      UniProtKB/TrEMBL
      A0A178VCY3, A0A5S9X967
      Conserved Domains (1) summary
      smart00415
      Location:20 → 113
      HSF; heat shock factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCW5.2

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