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    Outer arm dynein light chain 1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819843, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Outer arm dynein light chain 1 protein
    Primary source
    TAIR:AT3G17920
    Locus tag
    AT3G17920
    See related
    Araport:AT3G17920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (6136986..6142157)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene heat-inducible transcription repressor Neighboring gene Surfeit locus 1 cytochrome c oxidase biogenesis protein Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338314.1
    NM_001338315.1
    NM_112673.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Outer arm dynein light chain 1 protein
    NP_001319579.1
    • Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G48540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_188419.2
    • Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G48540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6136986..6142157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112673.3 → NP_188419.2  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188419.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F897, F4J6G5
      Conserved Domains (4) summary
      cd00116
      Location:189 → 297
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:193 → 214
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:51 → 78
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:237 → 295
      LRR_8; Leucine rich repeat

    2. NM_001338314.1 → NP_001319579.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHP0, B3H486

    3. NM_001338315.1 → NP_001326531.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHP0, A0A1I9LPK3
    Nucleotide Protein
    Heading Accession and Version

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