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    Transcription initiation factor IIF, beta subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824392, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription initiation factor IIF, beta subunit
    Primary source
    TAIR:AT3G52270
    Locus tag
    AT3G52270
    See related
    Araport:AT3G52270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (19386983..19388944, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transcriptional regulator ATRX Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene Pseudouridine synthase family protein Neighboring gene general transcription factor group E6 Neighboring gene tRNA-Pro

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339567.1
    NM_115087.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIIF complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transcription initiation factor IIF, beta subunit
    NP_190795.3
    • Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, catalytic activity, ATP binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIF complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT1G75510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19386983..19388944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115087.4 → NP_190795.3  Transcription initiation factor IIF, beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190795.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VG44, F4J6V5
      Conserved Domains (2) summary
      pfam02270
      Location:88 → 260
      TFIIF_beta; Transcription initiation factor IIF, beta subunit
      cl02122
      Location:23 → 135
      TFIIF_beta; Transcription initiation factor IIF, beta subunit

    2. NM_001339567.1 → NP_001327835.1  Transcription initiation factor IIF, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTJ0
    Nucleotide Protein
    Heading Accession and Version

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