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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838254, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT1G16830
    Locus tag
    AT1G16830
    See related
    Araport:AT1G16830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17F16.24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (5760626..5762619)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein Neighboring gene ncRNA Neighboring gene Reticulon family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101544.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_173127.4
    • Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 39592 Blast hits to 12738 proteins in 255 species: Archae - 3; Bacteria - 24; Metazoa - 191; Fungi - 211; Plants - 38370; Viruses - 0; Other Eukaryotes - 793 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5760626..5762619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101544.5 → NP_173127.4  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173127.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EDA9
      UniProtKB/TrEMBL
      A0A178W1X4, A0A5S9UQH3
      Conserved Domains (3) summary
      PLN03077
      Location:250 → 571
      PLN03077; Protein ECB2; Provisional
      PLN03081
      Location:130 → 349
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:249 → 276
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EDA9.2

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