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    Ribosomal protein L20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838245, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L20
    Primary source
    TAIR:AT1G16740
    Locus tag
    AT1G16740
    See related
    Araport:AT1G16740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K19.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5727622..5729115)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene high chlorophyll fluorescence phenotype 173 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) Neighboring gene ncRNA Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101535.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal protein L20
    NP_173118.1
    • Ribosomal protein L20; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L20 (InterPro:IPR005813); BEST Arabidopsis thaliana protein match is: ribosomal protein L20 (TAIR:ATCG00660.1); Has 8162 Blast hits to 8162 proteins in 2777 species: Archae - 0; Bacteria - 5193; Metazoa - 126; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 2222 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5727622..5729115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101535.3 → NP_173118.1  Ribosomal protein L20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173118.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WF80, Q8LCN1
      Conserved Domains (1) summary
      pfam00453
      Location:3 → 95
      Ribosomal_L20; Ribosomal protein L20
    Nucleotide Protein
    Heading Accession and Version

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