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    GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838246, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547)
    Primary source
    TAIR:AT1G16750
    Locus tag
    AT1G16750
    See related
    Araport:AT1G16750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K19.16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (5729057..5731934, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene high chlorophyll fluorescence phenotype 173 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein L20 Neighboring gene ncRNA Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332255.1
    NM_101536.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547)
    NP_564005.2
    • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G13000.2); Has 699 Blast hits to 674 proteins in 105 species: Archae - 2; Bacteria - 80; Metazoa - 34; Fungi - 2; Plants - 533; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5729057..5731934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101536.3 → NP_564005.2  GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564005.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5E6, Q8L7U6
      Conserved Domains (2) summary
      pfam04784
      Location:313 → 447
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:41 → 121
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    2. NM_001332255.1 → NP_001321519.1  GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2Q4, A0A1P8AR48
    Nucleotide Protein
    Heading Accession and Version

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