U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RHS13 root hair specific 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828083, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RHS13
    Official Full Name
    root hair specific 13
    Primary source
    TAIR:AT4G02270
    Locus tag
    AT4G02270
    See related
    Araport:AT4G02270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    root hair specific 13; T2H3.4; T2H3_4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RHS13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (992111..993039, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene RELA/SPOT homolog 1 Neighboring gene sucrose synthase 3 Neighboring gene glycosyl hydrolase 9B13

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A cell-wall protein SRPP provides physiological integrity to the Arabidopsis seed. Uno H, et al. J Plant Res, 2019 Jan. PMID 30673938
    2. Enhancement of cell wall protein SRPP expression during emergent root hair development in Arabidopsis. Uno H, et al. Plant Signal Behav, 2017 Oct 3. PMID 28837399, Free PMC Article
    3. SRPP, a Cell Wall Protein is Involved in Development and Protection of Seeds and Root Hairs in Arabidopsis thaliana. Tanaka N, et al. Plant Cell Physiol, 2017 Apr 1. PMID 28138059
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These results indicate that SRPP is essential for the production of normal viable seeds in siliques under stress conditions.
      Title: A cell-wall protein SRPP provides physiological integrity to the Arabidopsis seed.
    2. SRPP contributes to the construction of robust cell walls, whereby it plays a key role in the development of root hairs and seeds. [SRPP]
      Title: SRPP, a Cell Wall Protein is Involved in Development and Protection of Seeds and Root Hairs in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_116460.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to phosphate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to phosphate starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in heat acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to ethylene IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to low humidity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root hair cell development IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in root hair cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in seed development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in unidimensional cell growth IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    root hair specific 13
    NP_192136.1
    • root hair specific 13 (RHS13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root hair, root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT2G47540.1); Has 108 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      992111..993039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116460.4 → NP_192136.1  root hair specific 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192136.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81417
      UniProtKB/TrEMBL
      A0A178UY93, A0A654FL81
      Conserved Domains (1) summary
      pfam01190
      Location:42 → 129
      Pollen_Ole_e_I; Pollen proteins Ole e I like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81417.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools