U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826497, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
    Primary source
    TAIR:AT4G09160
    Locus tag
    AT4G09160
    See related
    Araport:AT4G09160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8A17.90; T8A17_90
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (5839599..5842456)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene T-complex protein 11 Neighboring gene low-molecular-weight cysteine-rich 36 Neighboring gene uncharacterized protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PATELLINS are regulators of auxin-mediated PIN1 relocation and plant development in Arabidopsis thaliana. Tejos R, et al. J Cell Sci, 2018 Jan 29. PMID 28687624
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001340613.1
    NM_001340614.1
    NM_116985.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to auxin stimulus IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein localization involved in auxin polar transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
    NP_192655.2
    • SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G72160.1); Has 12185 Blast hits to 8606 proteins in 820 species: Archae - 53; Bacteria - 1604; Metazoa - 4851; Fungi - 2300; Plants - 1007; Viruses - 130; Other Eukaryotes - 2240 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      5839599..5842456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116985.3 → NP_192655.2  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192655.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WP99, Q9M0R2
      UniProtKB/TrEMBL
      A0A5S9XRD8
      Conserved Domains (2) summary
      cd00170
      Location:383 → 547
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
      pfam03765
      Location:308 → 360
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

    2. NM_001340613.1 → NP_001328491.1  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R9, A0A5S9XRD8

    3. NM_001340614.1 → NP_001328490.1  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4T6, A0A5S9XRD8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M0R2.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.