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    CNGC9 cyclic nucleotide gated channel 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829179, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CNGC9
    Official Full Name
    cyclic nucleotide gated channel 9
    Primary source
    TAIR:AT4G30560
    Locus tag
    AT4G30560
    See related
    Araport:AT4G30560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCNGC9; cyclic nucleotide gated channel 9; F17I23.100; F17I23_100
    Summary
    member of Cyclic nucleotide gated channel family
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    Genomic context

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    See CNGC9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (14926834..14930355, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene Glucose-1-phosphate adenylyltransferase family protein Neighboring gene Phospholipid/glycerol acyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three CNGC Family Members, CNGC5, CNGC6, and CNGC9, Are Required for Constitutive Growth of Arabidopsis Root Hairs as Ca(2+)-Permeable Channels. Tan YQ, et al. Plant Commun, 2020 Jan 13. PMID 33404548, Free PMC Article
    2. Genes encoding calmodulin-binding proteins in the Arabidopsis genome. Reddy VS, et al. J Biol Chem, 2002 Mar 22. PMID 11782485
    3. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Three CNGC Family Members, CNGC5, CNGC6, and CNGC9, Are Required for Constitutive Growth of Arabidopsis Root Hairs as Ca(2+)-Permeable Channels.
      Title: Three CNGC Family Members, CNGC5, CNGC6, and CNGC9, Are Required for Constitutive Growth of Arabidopsis Root Hairs as Ca(2+)-Permeable Channels.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203944.2
    NM_001342012.1
    NM_001342013.1
    NM_001342014.1
    NM_119202.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium channel activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables calmodulin binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cyclic nucleotide gated channel 9
    NP_001190873.1
    • cyclic nucleotide gated channel 9 (CNGC9); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 6 (TAIR:AT2G23980.1).
    NP_194785.1
    • cyclic nucleotide gated channel 9 (CNGC9); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 6 (TAIR:AT2G23980.1); Has 3647 Blast hits to 3476 proteins in 272 species: Archae - 0; Bacteria - 61; Metazoa - 1611; Fungi - 53; Plants - 1017; Viruses - 0; Other Eukaryotes - 905 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14926834..14930355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119202.4 → NP_194785.1  cyclic nucleotide gated channel 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194785.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M0A4
      UniProtKB/TrEMBL
      A0A5S9XXR7, A0A654FUR0
      Conserved Domains (2) summary
      PLN03192
      Location:161 → 584
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:513 → 644
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    2. NM_001203944.2 → NP_001190873.1  cyclic nucleotide gated channel 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190873.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1Y4, A0A384L7C9, F4JQC2
      Conserved Domains (2) summary
      PLN03192
      Location:135 → 558
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:487 → 618
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    3. NM_001342012.1 → NP_001329898.1  cyclic nucleotide gated channel 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1Y4, A0A384L7C9, F4JQC2
      Conserved Domains (2) summary
      PLN03192
      Location:135 → 558
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:487 → 618
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    4. NM_001342013.1 → NP_001329900.1  cyclic nucleotide gated channel 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M0A4
      UniProtKB/TrEMBL
      A0A5S9XXR7, A0A654FUR0
      Conserved Domains (2) summary
      PLN03192
      Location:161 → 584
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:513 → 644
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    5. NM_001342014.1 → NP_001329899.1  cyclic nucleotide gated channel 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1Y4, A0A384L7C9, F4JQC2
      Conserved Domains (2) summary
      PLN03192
      Location:135 → 558
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:487 → 618
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M0A4.1

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