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    protein-tyrosine phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823588, updated on 18-Sep-2024

    Summary

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    Official Full Name
    protein-tyrosine phosphatase
    Primary source
    TAIR:AT3G44620
    Locus tag
    AT3G44620
    See related
    Araport:AT3G44620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (16193674..16195833)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Protein kinase superfamily protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene uncharacterized protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203081.1
    NM_114330.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    protein-tyrosine phosphatase
    NP_001190010.1
    • protein tyrosine phosphatases;protein tyrosine phosphatases; FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase/arsenate reductase (InterPro:IPR000106), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867).
    NP_190048.2
    • protein tyrosine phosphatases;protein tyrosine phosphatases; FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase/arsenate reductase (InterPro:IPR000106), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867); Has 5215 Blast hits to 5214 proteins in 1894 species: Archae - 4; Bacteria - 4223; Metazoa - 305; Fungi - 139; Plants - 47; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16193674..16195833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114330.5 → NP_190048.2  protein-tyrosine phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190048.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XHW7, Q67YE7
      Conserved Domains (1) summary
      cd00115
      Location:77 → 233
      LMWPc; Low molecular weight phosphatase family;

    2. NM_001203081.1 → NP_001190010.1  protein-tyrosine phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190010.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XHW7, F4J355
      Conserved Domains (1) summary
      cd00115
      Location:77 → 256
      LMWPc; Low molecular weight phosphatase family;
    Nucleotide Protein
    Heading Accession and Version

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