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    Regulator of chromosome condensation (RCC1) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823920, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Regulator of chromosome condensation (RCC1) family protein
    Primary source
    TAIR:AT3G47660
    Locus tag
    AT3G47660
    See related
    Araport:AT3G47660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (17570696..17574805)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene ncRNA Neighboring gene ternary complex factor MIP1 leucine-zipper protein Neighboring gene DNA binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001339327.1
    NM_001339328.1
    NM_001339329.1
    NM_114634.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Regulator of chromosome condensation (RCC1) family protein
    NP_190350.4
    • Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 18978 Blast hits to 7605 proteins in 414 species: Archae - 65; Bacteria - 1839; Metazoa - 7882; Fungi - 907; Plants - 2582; Viruses - 3; Other Eukaryotes - 5700 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17570696..17574805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339324.1 → NP_001325561.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLL7, A0A5S9XJI1

    2. NM_001339325.1 → NP_001325560.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XJI1, A0A654FDV7, Q9SN72
      Conserved Domains (3) summary
      smart00064
      Location:634 → 699
      FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
      COG5184
      Location:254 → 633
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      cd13365
      Location:12 → 119
      PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain

    3. NM_001339326.1 → NP_001325559.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLL5, A0A5S9XJI1

    4. NM_114634.4 → NP_190350.4  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190350.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XJI1, F4JCN3
      Conserved Domains (4) summary
      cd13365
      Location:15 → 122
      PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
      pfam00415
      Location:424 → 473
      RCC1; Regulator of chromosome condensation (RCC1) repeat
      pfam01363
      Location:641 → 701
      FYVE; FYVE zinc finger
      pfam13540
      Location:566 → 595
      RCC1_2; Regulator of chromosome condensation (RCC1) repeat

    5. NM_001339327.1 → NP_001325562.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XJI1, A0A654FDV7, Q9SN72
      Conserved Domains (3) summary
      smart00064
      Location:634 → 699
      FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
      COG5184
      Location:254 → 633
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      cd13365
      Location:12 → 119
      PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain

    6. NM_001339328.1 → NP_001325558.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLL4, A0A5S9XJI1

    7. NM_001339329.1 → NP_001325557.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLL3, A0A5S9XJI1
    Nucleotide Protein
    Heading Accession and Version

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