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    Zn-dependent exopeptidases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824430, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zn-dependent exopeptidases superfamily protein
    Primary source
    TAIR:AT3G52640
    Locus tag
    AT3G52640
    See related
    Araport:AT3G52640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    17
    Sequence:
    Chromosome: 3; NC_003074.8 (19514837..19520596, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GATA zinc finger protein Neighboring gene uncharacterized protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gamma-secretase subunits associate in intracellular membrane compartments in Arabidopsis thaliana. Smolarkiewicz M, et al. J Exp Bot, 2014 Jul. PMID 24723404, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001035771.1
    NM_115124.5
    NM_202690.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi-associated vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Zn-dependent exopeptidases superfamily protein
    NP_001030848.1
    • Zn-dependent exopeptidases superfamily protein; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_190832.3
    • Zn-dependent exopeptidases superfamily protein; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 236 Blast hits to 233 proteins in 88 species: Archae - 0; Bacteria - 4; Metazoa - 152; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
    NP_974419.1
    • Zn-dependent exopeptidases superfamily protein; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19514837..19520596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115124.5 → NP_190832.3  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190832.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GUM5, Q9LXJ9, Q9LXK0
      UniProtKB/TrEMBL
      A0A178VBP2, A0A7G2ESD8
      Conserved Domains (1) summary
      pfam05450
      Location:251 → 444
      Nicastrin; Nicastrin

    2. NM_202690.2 → NP_974419.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974419.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FF76, F4J819
      Conserved Domains (1) summary
      cd03881
      Location:48 → 658
      M28_Nicastrin; M28 Zn-peptidase nicastrin, a main component of gamma-secretase complex

    3. NM_001035771.1 → NP_001030848.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030848.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FF76, F4J820
      Conserved Domains (1) summary
      cl14876
      Location:251 → 440
      Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GUM5.1

    Gene LinkOut

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