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    EMB3135 harpin-induced protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831062, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB3135
    Official Full Name
    harpin-induced protein
    Primary source
    TAIR:AT5G11890
    Locus tag
    AT5G11890
    See related
    Araport:AT5G11890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3135; F14F18.60; F14F18_60
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    Genomic context

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    See EMB3135 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (3831500..3833151)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SCP1-like small phosphatase 5 Neighboring gene Alkaline phytoceramidase (aPHC) Neighboring gene Pyridoxal-dependent decarboxylase family protein Neighboring gene Translation initiation factor SUI1 family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene 6-&1-fructan exohydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121227.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    harpin-induced protein
    NP_196750.1
    • FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3831500..3833151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121227.3 → NP_196750.1  harpin-induced protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196750.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UG53, A0A5S9Y424, Q9LYI4
    Nucleotide Protein
    Heading Accession and Version

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