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    Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834199, updated on 18-Sep-2024

    Summary

    Official Full Name
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Primary source
    TAIR:AT5G41940
    Locus tag
    AT5G41940
    See related
    Araport:AT5G41940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJC20.4; MJC20_4
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (16781858..16785609)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Mediator complex, subunit Med10 Neighboring gene GRAS family transcription factor Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene zinc finger matrin-type protein Neighboring gene Metal-dependent protein hydrolase

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    • At5g41920_Arabidopsis_lyrata_ssp._lyrata_CAN10 (e-PCR)
    • At5g41920_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_123559.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    NP_199009.2
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G53570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16781858..16785609
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123559.5NP_199009.2  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199009.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT72, A0A5S9YA55, Q67YN2
      Conserved Domains (2) summary
      COG5271
      Location:137261
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      cl02495
      Location:325466
      RabGAP-TBC; Rab-GTPase-TBC domain