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    OPT8 oligopeptide transporter 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835434, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OPT8
    Official Full Name
    oligopeptide transporter 8
    Primary source
    TAIR:AT5G53520
    Locus tag
    AT5G53520
    See related
    Araport:AT5G53520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATOPT8; MNC6.6; MNC6_6; oligopeptide transporter 8
    Summary
    Encodes an oligopeptide transporter. Target promoter of the male germline-specific transcription factor DUO1.
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    Genomic context

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    See OPT8 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (21743366..21746061)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene oligopeptide transporter 9 Neighboring gene vacuolar protein sorting 26A Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene YELLOW STRIPE like 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An oligopeptide transporter gene family in Arabidopsis. Koh S, et al. Plant Physiol, 2002 Jan. PMID 11788749, Free PMC Article
    2. The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis. Borg M, et al. Plant Cell, 2011 Feb. PMID 21285328, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124732.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oligopeptide transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen sperm cell differentiation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oligopeptide transporter 8
    NP_200164.1
    • oligopeptide transporter 8 (OPT8); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 1 (TAIR:AT4G27730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21743366..21746061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124732.2 → NP_200164.1  oligopeptide transporter 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200164.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PDJ8, Q9FJD1
      UniProtKB/TrEMBL
      A0A5S9YFZ6
      Conserved Domains (1) summary
      TIGR00728
      Location:22 → 698
      OPT_sfam; oligopeptide transporter, OPT superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJD1.1

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