U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CRLK1 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835548, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CRLK1
    Official Full Name
    Protein kinase superfamily protein
    Primary source
    TAIR:AT5G54590
    Locus tag
    AT5G54590
    See related
    Araport:AT5G54590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    calcium/calmodulin-regulated receptor-like kinase 1; MRB17.9; MRB17_9
    Summary
    Splice variant At5g54590.2 encodes CRLK1 (440-amino acid in length) calcium/calmodulin-regulated receptor-like kinase crucial for cold tolerance. CRLK1 is Primarily localized in the plasma membrane.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CRLK1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (22179700..22182828)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Translation protein SH3-like family protein Neighboring gene ankyrin Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A calcium/calmodulin-regulated member of the receptor-like kinase family confers cold tolerance in plants. Yang T, et al. J Biol Chem, 2010 Mar 5. PMID 20026608, Free PMC Article
    2. Phosphorylation of Arabidopsis thaliana MEKK1 via Ca(2+) signaling as a part of the cold stress response. Furuya T, et al. J Plant Res, 2013 Nov. PMID 23857079
    3. Calcium/calmodulin-regulated receptor-like kinase CRLK1 interacts with MEKK1 in plants. Yang T, et al. Plant Signal Behav, 2010 Aug. PMID 20724845, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001345091.1
    NM_001345092.1
    NM_124840.3
    NM_180858.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cold acclimation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to cold IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Protein kinase superfamily protein
    NP_001318798.1
    • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G15730.2); Has 122839 Blast hits to 121076 proteins in 4427 species: Archae - 107; Bacteria - 13574; Metazoa - 46062; Fungi - 10515; Plants - 33930; Viruses - 482; Other Eukaryotes - 18169 (source: NCBI BLink).
    NP_851189.1
    • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G15730.2); Has 39067 Blast hits to 38752 proteins in 1020 species: Archae - 20; Bacteria - 845; Metazoa - 11608; Fungi - 1169; Plants - 22440; Viruses - 100; Other Eukaryotes - 2885 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22179700..22182828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345091.1 → NP_001318798.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K1S6, Q93ZP7, Q9FIU5
      UniProtKB/TrEMBL
      A0A178ULY8, A0A5S9YE15
      Conserved Domains (1) summary
      cd14066
      Location:119 → 378
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. NM_180858.1 → NP_851189.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851189.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIU5
      Conserved Domains (1) summary
      cl21453
      Location:119 → 247
      PKc_like; Protein Kinases, catalytic domain

    3. NM_124840.3 → NP_568809.2  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568809.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K1S6, Q93ZP7, Q9FIU5
      UniProtKB/TrEMBL
      A0A178ULY8, A0A5S9YE15
      Conserved Domains (1) summary
      cd14066
      Location:119 → 378
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    4. NM_001345092.1 → NP_001332565.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K1S6, Q93ZP7, Q9FIU5
      UniProtKB/TrEMBL
      A0A178ULY8, A0A5S9YE15
      Conserved Domains (1) summary
      cd14066
      Location:119 → 378
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIU5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools