MYB59 myb domain protein 59 [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Symbol: MYB59
Official Full Name: myb domain protein 59
Primary source: TAIR:AT5G59780
Locus tag: AT5G59780
See related: Araport:AT5G59780
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATMYB59; ATMYB59-1; ATMYB59-2; ATMYB59-3; MTH12.19; MTH12_19; myb domain protein 59; MYB DOMAIN PROTEIN 59
Summary: Encodes a putative transcription factor (MYB59).
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See MYB59 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 3

Sequence:: Chromosome: 5; NC_003076.8 (24081868..24083562, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Role of Potassium-Dependent Alternative Splicing of MYB59 in the Maintenance of Potassium Concentration in Shoots of Arabidopsis thaliana.
Title: Role of Potassium-Dependent Alternative Splicing of MYB59 in the Maintenance of Potassium Concentration in Shoots of Arabidopsis thaliana.
Arabidopsis thaliana Myb59 is involved in the response to Heterodera schachtii infestation, and its overexpression disturbs development of nematode-induced syncytia
Title: Arabidopsis thaliana Myb59 Gene Is Involved in the Response to Heterodera schachtii Infestation, and Its Overexpression Disturbs Regular Development of Nematode-Induced Syncytia.
MYB59 transcription factor behaves differently in metallicolous and non-metallicolous populations of Arabidopsis halleri.
Title: MYB59 transcription factor behaves differently in metallicolous and non-metallicolous populations of Arabidopsis halleri.
These data demonstrate that MYB59 responds to low K(+) (LK) stress and directs root-to-shoot K(+)/NO3 (-) transport by regulating the expression of NPF7.3 in Arabidopsis roots.
Title: The Transcription Factor MYB59 Regulates K(+)/NO(3) (-) Translocation in the Arabidopsis Response to Low K(+) Stress.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Orthologs from OrthoDB

NM_125370.4

Supported by ESTs:

NM_180894.4

Supported by ESTs:

NM_180895.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IPI Inferred from Physical Interaction more info	PubMed
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables sequence-specific DNA binding	IDA Inferred from Direct Assay more info	PubMed
enables transcription cis-regulatory region binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within cellular response to potassium ion	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of potassium ion transport	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

Go to the top of the page Help

Preferred Names: myb domain protein 59

NP_200786.1

myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, regulation of transcription, DNA-dependent, response to chitin, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NP_851225.1

myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.3); Has 5767 Blast hits to 5764 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 94; Plants - 4827; Viruses - 3; Other Eukaryotes - 535 (source: NCBI BLink).

NP_851226.1

myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, regulation of transcription, DNA-dependent, response to chitin, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.4); Has 7980 Blast hits to 7505 proteins in 427 species: Archae - 0; Bacteria - 0; Metazoa - 549; Fungi - 241; Plants - 5665; Viruses - 3; Other Eukaryotes - 1522 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

24081868..24083562 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_180895.3 → NP_851226.1 myb domain protein 59 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851226.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178U8K4

Conserved Domains (2) summary

smart00717
Location:42 → 89

SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

pfam00249
Location:42 → 87

Myb_DNA-binding; Myb-like DNA-binding domain
NM_180894.4 → NP_851225.1 myb domain protein 59 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851225.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178U9L3

Conserved Domains (2) summary

smart00717
Location:1 → 45

SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

pfam00249
Location:2 → 43

Myb_DNA-binding; Myb-like DNA-binding domain
NM_125370.4 → NP_200786.1 myb domain protein 59 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_200786.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O50069, Q0WPL8, Q4JL84, Q4JL85, Q4JL86, Q7DLH5, Q9FN86

UniProtKB/TrEMBL

A0A5S9YFR2, A0A654GCP6, A0A7G2FIE8

Conserved Domains (1) summary

PLN03091
Location:5 → 115

PLN03091; hypothetical protein; Provisional