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    Glyceraldehyde-3-phosphate dehydrogenase-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832230, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glyceraldehyde-3-phosphate dehydrogenase-like family protein
    Primary source
    TAIR:AT5G21060
    Locus tag
    AT5G21060
    See related
    Araport:AT5G21060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10F18.90; T10F18_90
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (7148978..7152922, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box protein 2 Neighboring gene hyccin Neighboring gene Fe(3+) dicitrate transport system permease Neighboring gene Uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036839.2
    NM_001036840.2
    NM_122114.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables homoserine dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in threonine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Glyceraldehyde-3-phosphate dehydrogenase-like family protein
    NP_001031916.1
    • Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7510 Blast hits to 7510 proteins in 2318 species: Archae - 181; Bacteria - 5355; Metazoa - 3; Fungi - 163; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).
    NP_001031917.1
    • Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7513 Blast hits to 7513 proteins in 2318 species: Archae - 181; Bacteria - 5355; Metazoa - 3; Fungi - 163; Plants - 133; Viruses - 0; Other Eukaryotes - 1678 (source: NCBI BLink).
    NP_197605.1
    • Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7499 Blast hits to 7499 proteins in 2310 species: Archae - 181; Bacteria - 5347; Metazoa - 3; Fungi - 160; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7148978..7152922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122114.3 → NP_197605.1  Glyceraldehyde-3-phosphate dehydrogenase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197605.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UB93, Q84JZ4, Q8LF92
      Conserved Domains (1) summary
      PLN02700
      Location:1 → 376
      PLN02700; homoserine dehydrogenase family protein

    2. NM_001036839.2 → NP_001031916.1  Glyceraldehyde-3-phosphate dehydrogenase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031916.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U956, F4K6Y8, Q8LF92
      Conserved Domains (2) summary
      PLN02700
      Location:1 → 378
      PLN02700; homoserine dehydrogenase family protein
      pfam00742
      Location:184 → 371
      Homoserine_dh; Homoserine dehydrogenase

    3. NM_001036840.2 → NP_001031917.1  Glyceraldehyde-3-phosphate dehydrogenase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031917.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K6Y9, Q8LF92
      Conserved Domains (2) summary
      PLN02700
      Location:1 → 378
      PLN02700; homoserine dehydrogenase family protein
      pfam00742
      Location:184 → 371
      Homoserine_dh; Homoserine dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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