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    Lhca5 photosystem I light harvesting complex protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841099, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Lhca5
    Official Full Name
    photosystem I light harvesting complex protein 5
    Primary source
    TAIR:AT1G45474
    Locus tag
    AT1G45474
    See related
    Araport:AT1G45474
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G19.4; F2G19_4; photosystem I light harvesting complex gene 5
    Summary
    Encodes a component of the light harvesting complex of photosystem I.
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    Genomic context

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    See Lhca5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (17179250..17180806)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Translation elongation factor EFG/EF2 protein Neighboring gene uncharacterized protein Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene receptor like protein 6 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Excitation energy trapping in photosystem I complexes depleted in Lhca1 and Lhca4. Ihalainen JA, et al. FEBS Lett, 2005 Aug 29. PMID 16098971
    2. Pigment binding, fluorescence properties, and oligomerization behavior of Lhca5, a novel light-harvesting protein. Storf S, et al. J Biol Chem, 2005 Feb 18. PMID 15563470
    3. Lhca5 interaction with plant photosystem I. Lucinski R, et al. FEBS Lett, 2006 Nov 27. PMID 17107674
    4. The role of the individual Lhcas in photosystem I excitation energy trapping. Wientjes E, et al. Biophys J, 2011 Aug 3. PMID 21806943, Free PMC Article
    5. Lhca5--an LHC-type protein associated with photosystem I. Ganeteg U, et al. Plant Mol Biol, 2004 Mar. PMID 15356385

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. rarely expressed Lhca5 light-harvesting protein interacts with Light Harvesting Complex I in the Lhca2/Lhca3-site.
      Title: Lhca5 interaction with plant photosystem I.
    2. Lhca5 is indeed a protein belonging to the light-harvesting antenna of photosystem I
      Title: Pigment binding, fluorescence properties, and oligomerization behavior of Lhca5, a novel light-harvesting protein.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103597.5
    NM_179447.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables pigment binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within photosynthesis, light harvesting in photosystem I IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to low light intensity stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of photosystem I antenna complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosystem I light harvesting complex protein 5
    NP_175137.1
    • photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
    NP_849778.1
    • photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17179250..17180806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179447.2 → NP_849778.1  photosystem I light harvesting complex protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849778.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFW4, Q8L9Y7, Q9C639, Q9XF85
      UniProtKB/TrEMBL
      A0A178WNQ0, A0A5S9WK69, A0A7G2DYT7
      Conserved Domains (1) summary
      PLN00147
      Location:2 → 254
      PLN00147; light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

    2. NM_103597.5 → NP_175137.1  photosystem I light harvesting complex protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175137.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFW4, Q8L9Y7, Q9C639, Q9XF85
      UniProtKB/TrEMBL
      A0A178WNQ0, A0A5S9WK69, A0A7G2DYT7
      Conserved Domains (1) summary
      PLN00147
      Location:2 → 254
      PLN00147; light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C639.1

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