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    CBLL1-AS1 CBLL1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101927974, updated on 10-Dec-2024

    Summary

    Official Symbol
    CBLL1-AS1provided by HGNC
    Official Full Name
    CBLL1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55571
    See related
    Ensembl:ENSG00000241764 AllianceGenome:HGNC:55571
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 25.2), thyroid (RPKM 1.9) and 7 other tissues See more
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    Genomic context

    See CBLL1-AS1 in Genome Data Viewer
    Location:
    7q22.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (107742753..107744581, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (109061188..109063016, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (107383198..107385026, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene BANF1 pseudogene 5 Neighboring gene SLC26A4 antisense RNA 1 Neighboring gene MPRA-validated peak6681 silencer Neighboring gene solute carrier family 26 member 4 Neighboring gene Sharpr-MPRA regulatory region 3291 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:107383176-107383695 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:107383696-107384214 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26495 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26496 Neighboring gene Cbl proto-oncogene like 1 Neighboring gene solute carrier family 26 member 3 Neighboring gene GFI1 motif-containing MPRA enhancer 278 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class C pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_144536.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002467, BX280187, CA418582
      Related
      ENST00000663315.4
    2. NR_144537.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002467, BM759699, CA418582, DA150294
      Related
      ENST00000440971.4
    3. NR_144539.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002467, CA418582
      Related
      ENST00000653575.3
    4. NR_144540.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002467, CA418582
      Related
      ENST00000671091.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      107742753..107744581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      109061188..109063016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)