U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC101929297 uncharacterized LOC101929297 [ Homo sapiens (human) ]

    Gene ID: 101929297, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC101929297
    Gene description
    uncharacterized LOC101929297
    See related
    Ensembl:ENSG00000233365
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC101929297 in Genome Data Viewer
    Location:
    6q27
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (166236969..166256947)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (167606818..167626795)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (166650457..166670435)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:166581481-166582075 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17773 Neighboring gene T-box transcription factor T Neighboring gene lncRNA divergent activator of TBXT Neighboring gene NANOG hESC enhancer GRCh37_chr6:166610696-166611243 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:166618881-166620080 Neighboring gene RNA, U6 small nuclear 153, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr6:166637642-166637828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:166654823-166655322 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:166666701-166667359 Neighboring gene G protein subunit gamma 5 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:166667360-166668017 Neighboring gene uncharacterized LOC107986668 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:166671501-166672700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:166685531-166686036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:166688619-166689118 Neighboring gene uncharacterized LOC105378118 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25429 Neighboring gene uncharacterized LOC107986669 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17774 Neighboring gene proline rich 18

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125862.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121956
      Related
      ENST00000444219.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      166236969..166256947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187557.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      16390..36368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      167606818..167626795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)