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    A530016L24Rik RIKEN cDNA A530016L24 gene [ Mus musculus (house mouse) ]

    Gene ID: 319942, updated on 27-Nov-2024

    Summary

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    Official Symbol
    A530016L24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A530016L24 geneprovided by MGI
    Primary source
    MGI:MGI:2443020
    See related
    Ensembl:ENSMUSG00000043122 AllianceGenome:MGI:2443020
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nrac
    Summary
    Located in plasma membrane. Orthologous to human C14orf180 (chromosome 14 open reading frame 180). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in mammary gland adult (RPKM 66.5), subcutaneous fat pad adult (RPKM 63.1) and 4 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See A530016L24Rik in Genome Data Viewer
    Location:
    12 F1; 12 61.2 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (112455829..112466362)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (112489394..112499928)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A730018C14 gene Neighboring gene Riken cDNA B020018J22 gene Neighboring gene transmembrane protein 179 Neighboring gene STARR-seq mESC enhancer starr_33351 Neighboring gene predicted gene, 53770 Neighboring gene predicted gene, 40584

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Nrac, a novel nutritionally-regulated adipose and cardiac-enriched gene. Zhang R, et al. PLoS One, 2012. PMID 23029450, Free PMC Article
    2. Genomic variants in an inbred mouse model predict mania-like behaviors. Saul MC, et al. PLoS One, 2018. PMID 29768498, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nutritionally-regulated adipose and cardiac-enriched protein
    Names
    transmembrane protein C14orf180 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177039.4 → NP_796013.1  nutritionally-regulated adipose and cardiac-enriched protein

      See identical proteins and their annotated locations for NP_796013.1

      Status: VALIDATED

      Source sequence(s)
      AK163065
      Consensus CDS
      CCDS49188.1
      UniProtKB/Swiss-Prot
      Q8BNX7, Q8R0Q1
      UniProtKB/TrEMBL
      A0A0R4J0P8
      Related
      ENSMUSP00000056220.7, ENSMUST00000057465.7
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      112455829..112466362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515980.5 → XP_006516043.1  nutritionally-regulated adipose and cardiac-enriched protein isoform X1

      See identical proteins and their annotated locations for XP_006516043.1

      UniProtKB/Swiss-Prot
      Q8BNX7, Q8R0Q1
      UniProtKB/TrEMBL
      A0A0R4J0P8
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)

    2. XM_006515981.5 → XP_006516044.1  nutritionally-regulated adipose and cardiac-enriched protein isoform X1

      See identical proteins and their annotated locations for XP_006516044.1

      UniProtKB/Swiss-Prot
      Q8BNX7, Q8R0Q1
      UniProtKB/TrEMBL
      A0A0R4J0P8
      Conserved Domains (1) summary
      pfam15555
      Location:33 → 165
      DUF4658; Domain of unknown function (DUF4658)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BNX7.2 GenPept UniProtKB/Swiss-Prot:Q8BNX7

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