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    Mfsd13b major facilitator superfamily domain containing 13B [ Mus musculus (house mouse) ]

    Gene ID: 74466, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Mfsd13bprovided by MGI
    Official Full Name
    major facilitator superfamily domain containing 13Bprovided by MGI
    Primary source
    MGI:MGI:1921716
    See related
    Ensembl:ENSMUSG00000030877 AllianceGenome:MGI:1921716
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933427G17Rik
    Summary
    Orthologous to human MFSD13B (major facilitator superfamily domain containing 13B (pseudogene)). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 30.5) See more
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    Genomic context

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    See Mfsd13b in Genome Data Viewer
    Location:
    7 F2; 7 65.06 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (120581664..120614670)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (120982442..121015000)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6593 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide E Neighboring gene cerebellar degeneration-related 2 Neighboring gene STARR-positive B cell enhancer ABC_E450 Neighboring gene predicted pseudogene 9234 Neighboring gene STARR-positive B cell enhancer ABC_E4973 Neighboring gene predicted gene, 25924 Neighboring gene methyltransferase like 9 Neighboring gene 60S ribosomal protein L32 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC74466

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374644.1 → NP_001361573.1  uncharacterized protein LOC74466 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC122248
      Consensus CDS
      CCDS90323.1
      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    2. NM_028955.1 → NP_083231.1  uncharacterized protein LOC74466 isoform 2

      See identical proteins and their annotated locations for NP_083231.1

      Status: VALIDATED

      Source sequence(s)
      AC122248, AK016951
      Consensus CDS
      CCDS52384.1
      UniProtKB/TrEMBL
      Q9D3Y2
      Related
      ENSMUSP00000033166.4, ENSMUST00000033166.10
      Conserved Domains (1) summary
      cl28910
      Location:12 → 448
      MFS; Major Facilitator Superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      120581664..120614670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030243042.2 → XP_030098902.1  uncharacterized protein LOC74466 isoform X6

      Conserved Domains (1) summary
      cl28910
      Location:12 → 290
      MFS; Major Facilitator Superfamily

    2. XM_006508267.5 → XP_006508330.1  uncharacterized protein LOC74466 isoform X5

      Conserved Domains (1) summary
      cl28910
      Location:12 → 290
      MFS; Major Facilitator Superfamily

    3. XM_006508268.5 → XP_006508331.1  uncharacterized protein LOC74466 isoform X6

      Conserved Domains (1) summary
      cl28910
      Location:12 → 290
      MFS; Major Facilitator Superfamily

    4. XM_006508266.4 → XP_006508329.1  uncharacterized protein LOC74466 isoform X4

      See identical proteins and their annotated locations for XP_006508329.1

      Conserved Domains (1) summary
      cl28910
      Location:12 → 420
      MFS; Major Facilitator Superfamily

    5. XM_006508269.4 → XP_006508332.1  uncharacterized protein LOC74466 isoform X7

      Conserved Domains (1) summary
      cl28910
      Location:12 → 290
      MFS; Major Facilitator Superfamily

    6. XM_006508270.4 → XP_006508333.1  uncharacterized protein LOC74466 isoform X8

      Conserved Domains (1) summary
      cl28910
      Location:12 → 290
      MFS; Major Facilitator Superfamily

    7. XM_006508265.4 → XP_006508328.1  uncharacterized protein LOC74466 isoform X3

      Conserved Domains (1) summary
      cl28910
      Location:12 → 421
      MFS; Major Facilitator Superfamily

    8. XM_030243041.1 → XP_030098901.1  uncharacterized protein LOC74466 isoform X2

      UniProtKB/TrEMBL
      Q9D3Y2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 448
      MFS; Major Facilitator Superfamily

    9. XM_006508264.5 → XP_006508327.1  uncharacterized protein LOC74466 isoform X2

      See identical proteins and their annotated locations for XP_006508327.1

      UniProtKB/TrEMBL
      Q9D3Y2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 448
      MFS; Major Facilitator Superfamily

    10. XM_017312355.2 → XP_017167844.1  uncharacterized protein LOC74466 isoform X1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    11. XM_006508257.4 → XP_006508320.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508320.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    12. XM_006508259.4 → XP_006508322.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508322.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    13. XM_006508255.4 → XP_006508318.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508318.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    14. XM_006508261.4 → XP_006508324.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508324.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Related
      ENSMUSP00000150654.2, ENSMUST00000216241.2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    15. XM_006508262.4 → XP_006508325.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508325.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    16. XM_006508256.4 → XP_006508319.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508319.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    17. XM_006508254.4 → XP_006508317.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508317.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    18. XM_006508263.4 → XP_006508326.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508326.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily

    19. XM_006508258.4 → XP_006508321.1  uncharacterized protein LOC74466 isoform X1

      See identical proteins and their annotated locations for XP_006508321.1

      UniProtKB/TrEMBL
      A0A1L1SUA2
      Conserved Domains (1) summary
      cl28910
      Location:12 → 449
      MFS; Major Facilitator Superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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