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    Celrr cerebellum expressed regulatory RNA [ Mus musculus (house mouse) ]

    Gene ID: 98452, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Celrrprovided by MGI
    Official Full Name
    cerebellum expressed regulatory RNAprovided by MGI
    Primary source
    MGI:MGI:2685664
    See related
    Ensembl:ENSMUSG00000097881 AllianceGenome:MGI:2685664
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Celr; Gm818; B230209K01Rik
    Summary
    Acts upstream of or within regulation of gene expression. Is expressed in brain and substantia nigra. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Celrr in Genome Data Viewer
    Location:
    1 E2.3; 1 52.81 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (121015134..121048704)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (121087405..121120975)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene 29345 Neighboring gene STARR-seq mESC enhancer starr_02070 Neighboring gene predicted gene, 34698 Neighboring gene STARR-seq mESC enhancer starr_02071 Neighboring gene predicted gene, 46155 Neighboring gene STARR-seq mESC enhancer starr_02073 Neighboring gene predicted gene, 41940 Neighboring gene STARR-seq mESC enhancer starr_02074 Neighboring gene STARR-positive B cell enhancer ABC_E3298 Neighboring gene insulin induced gene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain. Goff LA, et al. Proc Natl Acad Sci U S A, 2015 Jun 2. PMID 26034286, Free PMC Article
    2. Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. Lai KM, et al. PLoS One, 2015. PMID 25909911, Free PMC Article
    3. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. Sauvageau M, et al. Elife, 2013 Dec 31. PMID 24381249, Free PMC Article
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038008.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC117547
      Related
      ENSMUST00000181433.9

    2. NR_110450.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two alternate internal exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC117547

    3. NR_197183.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117547

    4. NR_197184.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117547

    5. NR_197185.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117547

    6. NR_197186.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117547

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      121015134..121048704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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