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    LINC02645 long intergenic non-protein coding RNA 2645 [ Homo sapiens (human) ]

    Gene ID: 105376351, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02645provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2645provided by HGNC
    Primary source
    HGNC:HGNC:54129
    See related
    AllianceGenome:HGNC:54129
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.0) See more
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    Genomic context

    See LINC02645 in Genome Data Viewer
    Location:
    10p15.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (2446253..2501462, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (2444969..2500246, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (2488447..2543654, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:2356765-2357964 Neighboring gene uncharacterized LOC105376349 Neighboring gene long intergenic non-protein coding RNA 701 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2518769-2519456 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2519457-2520142 Neighboring gene uncharacterized LOC107983989 Neighboring gene uncharacterized LOC105376350 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:2617610-2618209 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:2714425-2714926 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:2714927-2715426 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:2848111-2848728 Neighboring gene MPRA-validated peak843 silencer Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2907546-2908396 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2908397-2909247 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:2964441-2965640 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:2971572-2972141 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:2976328-2976864 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:3005950-3006496 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:3006497-3007043 Neighboring gene uncharacterized LOC105376352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:3026909-3027408

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136146.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024908, BX095760, DA405638

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      2446253..2501462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      2444969..2500246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)