NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009096.2 RefSeqGene
- Range
-
5002..59984
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001317195.3 → NP_001304124.1 cadherin-3 isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, which results in a frameshift and an early stop codon. The encoded isoform (2) has a shorter and distinct C-terminus compared to isoform 1. This isoform (2) may undergo proteolytic processing similar to isoform (1).
- Source sequence(s)
-
AW339148, BC014462, BQ945506, BU543746, CA489015, CN365479
- Consensus CDS
-
CCDS82004.1
- UniProtKB/TrEMBL
-
B4DLF0
- Related
- ENSP00000398485.2, ENST00000429102.6
- Conserved Domains (4) summary
-
- cd11304
Location:219 → 324
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam01049
Location:687 → 765
- Cadherin_C; Cadherin cytoplasmic region
- cl07391
Location:26 → 96
- Cadherin_pro; Cadherin prodomain like
- cl09101
Location:113 → 211
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
-
NM_001317196.2 → NP_001304125.1 cadherin-3 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon in its 5' UTR, resulting in the use of a downstream translation start site compared to variant 1. The encoded isoform (3) has a shorter N-terminus and lacks a predicted signal peptide compared to isoform 1.
- Source sequence(s)
-
AC099314, AK296968, AW339148, BQ945506, BU543746, CA489015, CN365479
- UniProtKB/TrEMBL
-
B4DLF0
- Conserved Domains (3) summary
-
- cd11304
Location:164 → 269
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam01049
Location:632 → 769
- Cadherin_C; Cadherin cytoplasmic region
- cl09101
Location:58 → 156
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
-
NM_001793.6 → NP_001784.2 cadherin-3 isoform 1 preproprotein
See identical proteins and their annotated locations for NP_001784.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC099314, AW339148, BC014462, BC041846, BQ945506, BU543746, CA489015, CN365479
- Consensus CDS
-
CCDS10868.1
- UniProtKB/Swiss-Prot
- B2R6F4, P22223, Q05DI6
- UniProtKB/TrEMBL
-
B4DLF0
- Related
- ENSP00000264012.4, ENST00000264012.9
- Conserved Domains (4) summary
-
- cd11304
Location:219 → 324
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam01049
Location:687 → 824
- Cadherin_C; Cadherin cytoplasmic region
- cl07391
Location:26 → 96
- Cadherin_pro; Cadherin prodomain like
- cl09101
Location:113 → 211
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
68645310..68733771
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047433450.1 → XP_047289406.1 cadherin-3 isoform X1
- UniProtKB/TrEMBL
-
B4DLF0
-
XM_011522800.4 → XP_011521102.1 cadherin-3 isoform X1
- UniProtKB/TrEMBL
-
B4DLF0
- Conserved Domains (4) summary
-
- cd11304
Location:219 → 324
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam01049
Location:687 → 762
- Cadherin_C; Cadherin cytoplasmic region
- cl07391
Location:26 → 96
- Cadherin_pro; Cadherin prodomain like
- cl09101
Location:113 → 211
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
74441601..74531453
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054379318.1 → XP_054235293.1 cadherin-3 isoform X1
- UniProtKB/TrEMBL
-
B4DLF0
-
XM_054379317.1 → XP_054235292.1 cadherin-3 isoform X1
- UniProtKB/TrEMBL
-
B4DLF0