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    Spata31e5 spermatogenesis associated 31 subfamily E member 5 [ Mus musculus (house mouse) ]

    Gene ID: 210962, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Spata31e5provided by MGI
    Official Full Name
    spermatogenesis associated 31 subfamily E member 5provided by MGI
    Primary source
    MGI:MGI:2685443
    See related
    Ensembl:ENSMUSG00000048411 AllianceGenome:MGI:2685443
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm597
    Expression
    Restricted expression toward testis adult (RPKM 4.0) See more
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    Genomic context

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    See Spata31e5 in Genome Data Viewer
    Location:
    1 A5; 1 10.98 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (28815203..28819333, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (28776122..28780252, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene Neighboring gene STARR-seq mESC enhancer starr_00485 Neighboring gene STARR-seq mESC enhancer starr_00486 Neighboring gene STARR-seq mESC enhancer starr_00487 Neighboring gene STARR-seq mESC enhancer starr_00488 Neighboring gene STARR-seq mESC enhancer starr_00489 Neighboring gene STARR-seq mESC enhancer starr_00490 Neighboring gene STARR-seq mESC enhancer starr_00491 Neighboring gene predicted gene 7846 Neighboring gene STARR-seq mESC enhancer starr_00492 Neighboring gene STARR-seq mESC enhancer starr_00493 Neighboring gene predicted gene, 45942 Neighboring gene RNA polymerase II associated protein 3 pseudogene Neighboring gene predicted gene 6462

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC210962

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013750.1 → NP_001013772.1  uncharacterized protein LOC210962

      Status: PREDICTED

      Source sequence(s)
      AC121566, BB615959
      Consensus CDS
      CCDS48232.1
      UniProtKB/TrEMBL
      B9EKN1, E9Q8J5
      Related
      ENSMUSP00000058140.4, ENSMUST00000059937.5
      Conserved Domains (1) summary
      pfam14650
      Location:123 → 341
      FAM75; FAM75 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      28815203..28819333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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